Data processing of spectroscopy data (analytical chemistry)¶
The data consists of Raman spectra of macrophages. Data treatment is mainly based on the library specio.
In [1]:
from specio import specread # pip install git+https://github.com/paris-saclay-cds/specio.git
from os import path
import glob
from SPARQLWrapper import SPARQLWrapper, JSON
import urllib.request
import os
import errno
import numpy as np
Query data to select spc files in your campaign¶
In [2]:
sparql = SPARQLWrapper("https://opendata1.opendata.u-psud.fr/sparql/")
sparql.setQuery("""
prefix daapp: <http://daap.dsi.universite-paris-saclay.fr/wiki/Data:Project#>
prefix project:<http://daap.dsi.universite-paris-saclay.fr/wiki/Data:Analyse_des_macrophages#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select ?spc
where {
<http://daap.dsi.universite-paris-saclay.fr/wiki/Analyse_des_macrophages_méthode_1> daapp:hasCampaign ?campaign .
?campaign project:hasSlide ?slide .
?slide project:hasCell ?cell .
?cell project:hasPosition ?position.
?position project:hasMeasure ?spc .
}
""")
sparql.setReturnFormat(JSON)
results = sparql.query().convert()
path = "/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02"
if not os.path.exists(path):
os.makedirs(path, exist_ok=False)
filenames = []
for result in results["results"]["bindings"]:
filename = result["spc"]["value"].replace("http://134.158.74.40/", "/home/jupyter/Notebooks/htdocs/")
if not os.path.exists(filename):
print('Beginning data file:'+filename)
urllib.request.urlretrieve(result["spc"]["value"],filename)
filenames.append(filename)
filenames
Out[2]:
['/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_c1.spc']
It is also possible to directly indicate directory and file extension to upload data¶
In [3]:
# DATA_PATH = ("/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02")
# EXT_FILE = "*.spc"
# filenames = glob.glob(path.join(DATA_PATH, EXT_FILE))
# filenames
In [4]:
filenames
Out[4]:
['/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EPA_L02_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell05_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell02_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell04_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412LDL_L02_cell07_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EDL_L03_cell05_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170412EDL_L02_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413STD_L03_cell07_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell02_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell06_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell02_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell01_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410LDL_L01_cell03_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170410EDL_L01_cell04_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell02_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413EPA_L03_cell06_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411EPA_L01_cell03_c3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_n2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_c1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170411STD_L01_cell06_c2.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_n1.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_n3.spc', '/home/jupyter/Notebooks/htdocs/Macrophages_imagerie/Methode_01/Campagne_02/20170413LDL_L03_cell07_c1.spc']
Read data¶
In [5]:
# def convert(f):
# #print(f)
# specread(f)
list_raman = [specread(f)
for f in filenames]
x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1)
In [6]:
print(type(list_raman[0]))
<class 'specio.core.util.Spectrum'>
Define the different groups of data (J774 macrophages are prepared in four different growth media)¶
In [7]:
cell_medium = ["EDL", "LDL", "STD", "EPA"]
dict_raman = {k: [] for k in cell_medium}
In [8]:
for key in dict_raman.keys():
for f in filenames:
if key in f:
dict_raman[key].append(specread(f))
x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1) x-y(1)
Define the size of the matrix; create the dataframe and import it to a readable format¶
In [9]:
spectrum = np.array([sp.amplitudes for sp in list_raman])
print(spectrum.shape)
(504, 1732)
In [10]:
metadata = []
In [11]:
for f in filenames:
name = os.path.basename(f)
date, plate, cell, comp = name.split('_')
date, medium = date[:8], date[8:]
comp = comp.split('.')[0]
metadata.append({'filename': name,
'date': date,
'medium': medium,
'plate': plate,
'cell': cell,
'comp': comp[0]})
In [12]:
import pandas as pd
metadata = pd.DataFrame(metadata)
print(metadata.head())
cell comp date filename medium plate 0 cell01 n 20170410 20170410LDL_L01_cell01_n1.spc LDL L01 1 cell01 n 20170410 20170410LDL_L01_cell01_n2.spc LDL L01 2 cell01 c 20170410 20170410LDL_L01_cell01_c1.spc LDL L01 3 cell07 n 20170413 20170413EPA_L03_cell07_n2.spc EPA L03 4 cell07 n 20170413 20170413EPA_L03_cell07_n3.spc EPA L03
In [13]:
df_spectrum = pd.DataFrame(spectrum, columns=list_raman[0].wavelength)
In [14]:
df_spectrum = pd.concat([metadata[['filename', 'medium', 'plate', 'comp']],
df_spectrum], axis='columns')
In [17]:
from openpyxl import Workbook
df_spectrum.to_excel("/home/jupyter/Notebooks/htdocs/data_RAMAN.xlsx")
In [18]:
df = df_spectrum.set_index(['filename', 'medium', 'plate', 'comp'])
print(df.head)
<bound method NDFrame.head of 400.199219 402.729828 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 270.222229 279.777771
20170410LDL_L01_cell01_n2.spc LDL L01 n 296.555542 284.000000
20170410LDL_L01_cell01_c1.spc LDL L01 c 200.000000 212.222214
20170413EPA_L03_cell07_n2.spc EPA L03 n 267.222260 273.888885
20170413EPA_L03_cell07_n3.spc EPA L03 n 254.333359 257.888855
20170413EPA_L03_cell07_c1.spc EPA L03 c 176.000015 197.555557
20170413LDL_L03_cell05_c1.spc LDL L03 c 179.333328 190.666672
20170413LDL_L03_cell05_c3.spc LDL L03 c 170.222214 175.555557
20170412EDL_L02_cell04_n1.spc EDL L02 n 210.111115 216.555557
20170412EDL_L02_cell04_c1.spc EDL L02 c 175.000015 179.111115
20170412EDL_L02_cell04_c2.spc EDL L02 c 175.000015 179.111115
20170413EDL_L03_cell07_n1.spc EDL L03 n 322.777771 320.777771
20170413EDL_L03_cell07_n2.spc EDL L03 n 224.444443 233.000000
20170413EDL_L03_cell07_c1.spc EDL L03 c 193.555557 192.111115
20170413LDL_L03_cell06_n3.spc LDL L03 n 191.444443 197.111115
20170413LDL_L03_cell06_c1.spc LDL L03 c 152.555573 170.444427
20170413LDL_L03_cell06_c2.spc LDL L03 c 160.888885 169.333328
20170412EDL_L02_cell05_n2.spc EDL L02 n 192.555573 201.222229
20170413LDL_L03_cell06_c3.spc LDL L03 c 191.333328 200.555557
20170411STD_L02_cell07_n1.spc STD L02 n 219.555557 226.111115
20170411STD_L01_cell04_n2.spc STD L01 n 217.777771 227.444443
20170411STD_L01_cell04_n3.spc STD L01 n 180.666672 187.777771
20170411STD_L01_cell04_c3.spc STD L01 c 156.888885 166.666672
20170411STD_L02_cell03_n2.spc STD L02 n 218.333328 225.777771
20170413STD_L03_cell01_n1.spc STD L03 n 232.555557 230.777771
20170413STD_L03_cell01_n2.spc STD L03 n 259.999969 267.555542
20170411STD_L02_cell03_c3.spc STD L02 c 191.888885 198.555557
20170413STD_L03_cell01_c3.spc STD L03 c 181.777771 193.777771
20170413LDL_L03_cell01_c3.spc LDL L03 c 174.666687 183.333328
20170411STD_L02_cell05_n1.spc STD L02 n 245.555557 255.111130
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 285.222229 298.555542
20170411EPA_L01_cell07_n3.spc EPA L01 n 228.000015 237.555573
20170413STD_L03_cell07_c1.spc STD L03 c 174.888885 179.333328
20170413LDL_L03_cell02_c2.spc LDL L03 c 181.555573 194.333344
20170413LDL_L03_cell02_c3.spc LDL L03 c 186.555557 198.555573
20170410LDL_L01_cell06_c3.spc LDL L01 c 159.555557 166.222229
20170410LDL_L01_cell02_n1.spc LDL L01 n 304.888855 305.333344
20170410LDL_L01_cell02_c1.spc LDL L01 c 332.333344 332.888885
20170413EPA_L03_cell01_n1.spc EPA L03 n 244.555557 261.000000
20170413EPA_L03_cell01_n2.spc EPA L03 n 219.111130 222.222229
20170413EPA_L03_cell01_c1.spc EPA L03 c 174.777771 182.555557
20170413EPA_L03_cell01_c2.spc EPA L03 c 165.000000 173.111115
20170413EPA_L03_cell01_c3.spc EPA L03 c 160.888885 173.333328
20170410LDL_L01_cell03_n3.spc LDL L01 n 218.333328 230.222229
20170410EDL_L01_cell04_n1.spc EDL L01 n 181.000000 210.111115
20170410EDL_L01_cell04_n3.spc EDL L01 n 187.666672 204.777771
20170410EDL_L01_cell04_c1.spc EDL L01 c 163.999985 180.999985
20170410EDL_L01_cell04_c2.spc EDL L01 c 189.111115 197.555573
20170413EPA_L03_cell02_n1.spc EPA L03 n 192.444443 194.222229
20170413EPA_L03_cell06_n2.spc EPA L03 n 216.666672 226.444443
20170413EPA_L03_cell06_n3.spc EPA L03 n 200.444443 201.444443
20170411EPA_L01_cell03_c1.spc EPA L01 c 175.999985 178.666672
20170411EPA_L01_cell03_c2.spc EPA L01 c 200.000000 208.666672
20170411EPA_L01_cell03_c3.spc EPA L01 c 166.222229 174.777771
20170411STD_L01_cell06_n2.spc STD L01 n 211.888885 217.222229
20170411STD_L01_cell06_c1.spc STD L01 c 162.444443 168.444443
20170411STD_L01_cell06_c2.spc STD L01 c 161.222229 168.666672
20170413LDL_L03_cell07_n1.spc LDL L03 n 227.333328 235.222229
20170413LDL_L03_cell07_n3.spc LDL L03 n 219.555557 235.333313
20170413LDL_L03_cell07_c1.spc LDL L03 c 194.888885 212.222229
405.259583 407.788513 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 276.444458 287.111115
20170410LDL_L01_cell01_n2.spc LDL L01 n 282.111115 284.111115
20170410LDL_L01_cell01_c1.spc LDL L01 c 215.555557 213.444458
20170413EPA_L03_cell07_n2.spc EPA L03 n 286.333344 278.777771
20170413EPA_L03_cell07_n3.spc EPA L03 n 273.444427 262.888885
20170413EPA_L03_cell07_c1.spc EPA L03 c 195.666687 194.555557
20170413LDL_L03_cell05_c1.spc LDL L03 c 191.888885 187.444443
20170413LDL_L03_cell05_c3.spc LDL L03 c 182.333328 169.555542
20170412EDL_L02_cell04_n1.spc EDL L02 n 222.000000 224.999985
20170412EDL_L02_cell04_c1.spc EDL L02 c 178.666672 171.777771
20170412EDL_L02_cell04_c2.spc EDL L02 c 178.666672 171.777771
20170413EDL_L03_cell07_n1.spc EDL L03 n 341.777771 342.777771
20170413EDL_L03_cell07_n2.spc EDL L03 n 231.666672 238.888885
20170413EDL_L03_cell07_c1.spc EDL L03 c 199.666672 197.555557
20170413LDL_L03_cell06_n3.spc LDL L03 n 206.222229 200.333328
20170413LDL_L03_cell06_c1.spc LDL L03 c 166.000000 167.111115
20170413LDL_L03_cell06_c2.spc LDL L03 c 168.777771 165.888870
20170412EDL_L02_cell05_n2.spc EDL L02 n 205.555557 206.222214
20170413LDL_L03_cell06_c3.spc LDL L03 c 204.444427 196.888885
20170411STD_L02_cell07_n1.spc STD L02 n 230.666672 221.555557
20170411STD_L01_cell04_n2.spc STD L01 n 233.000000 226.888885
20170411STD_L01_cell04_n3.spc STD L01 n 181.888885 182.555557
20170411STD_L01_cell04_c3.spc STD L01 c 165.666672 162.555573
20170411STD_L02_cell03_n2.spc STD L02 n 224.222229 229.888885
20170413STD_L03_cell01_n1.spc STD L03 n 231.444443 236.333328
20170413STD_L03_cell01_n2.spc STD L03 n 272.666656 272.777771
20170411STD_L02_cell03_c3.spc STD L02 c 190.222229 196.222229
20170413STD_L03_cell01_c3.spc STD L03 c 193.111115 186.111130
20170413LDL_L03_cell01_c3.spc LDL L03 c 176.888885 182.444443
20170411STD_L02_cell05_n1.spc STD L02 n 250.444443 251.333328
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 298.777771 290.444458
20170411EPA_L01_cell07_n3.spc EPA L01 n 234.777786 238.000000
20170413STD_L03_cell07_c1.spc STD L03 c 187.666672 193.555557
20170413LDL_L03_cell02_c2.spc LDL L03 c 193.333328 186.333328
20170413LDL_L03_cell02_c3.spc LDL L03 c 195.222229 196.000015
20170410LDL_L01_cell06_c3.spc LDL L01 c 161.444443 163.000000
20170410LDL_L01_cell02_n1.spc LDL L01 n 305.222229 292.777771
20170410LDL_L01_cell02_c1.spc LDL L01 c 334.666656 338.888885
20170413EPA_L03_cell01_n1.spc EPA L03 n 259.555542 257.888885
20170413EPA_L03_cell01_n2.spc EPA L03 n 223.333328 220.111115
20170413EPA_L03_cell01_c1.spc EPA L03 c 181.222214 181.777771
20170413EPA_L03_cell01_c2.spc EPA L03 c 168.777771 171.888870
20170413EPA_L03_cell01_c3.spc EPA L03 c 170.555573 177.777771
20170410LDL_L01_cell03_n3.spc LDL L01 n 226.000000 219.111115
20170410EDL_L01_cell04_n1.spc EDL L01 n 202.333328 199.333328
20170410EDL_L01_cell04_n3.spc EDL L01 n 209.888885 208.000015
20170410EDL_L01_cell04_c1.spc EDL L01 c 177.444443 180.555557
20170410EDL_L01_cell04_c2.spc EDL L01 c 198.888885 200.888885
20170413EPA_L03_cell02_n1.spc EPA L03 n 201.333328 203.777771
20170413EPA_L03_cell06_n2.spc EPA L03 n 221.111115 220.555557
20170413EPA_L03_cell06_n3.spc EPA L03 n 198.111115 208.777771
20170411EPA_L01_cell03_c1.spc EPA L01 c 187.444443 174.111115
20170411EPA_L01_cell03_c2.spc EPA L01 c 209.777771 196.333328
20170411EPA_L01_cell03_c3.spc EPA L01 c 174.000000 180.999985
20170411STD_L01_cell06_n2.spc STD L01 n 230.000000 224.000000
20170411STD_L01_cell06_c1.spc STD L01 c 168.888885 165.888870
20170411STD_L01_cell06_c2.spc STD L01 c 162.111115 165.888885
20170413LDL_L03_cell07_n1.spc LDL L03 n 241.777771 236.222229
20170413LDL_L03_cell07_n3.spc LDL L03 n 232.222214 234.888885
20170413LDL_L03_cell07_c1.spc LDL L03 c 206.222229 202.000000
410.316620 412.843903 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 287.666656 283.111115
20170410LDL_L01_cell01_n2.spc LDL L01 n 294.000000 312.555542
20170410LDL_L01_cell01_c1.spc LDL L01 c 208.333328 215.555557
20170413EPA_L03_cell07_n2.spc EPA L03 n 281.222229 269.222229
20170413EPA_L03_cell07_n3.spc EPA L03 n 266.666656 269.666656
20170413EPA_L03_cell07_c1.spc EPA L03 c 192.666656 186.777771
20170413LDL_L03_cell05_c1.spc LDL L03 c 189.444427 188.222229
20170413LDL_L03_cell05_c3.spc LDL L03 c 183.666672 172.888885
20170412EDL_L02_cell04_n1.spc EDL L02 n 217.777771 214.333328
20170412EDL_L02_cell04_c1.spc EDL L02 c 182.333328 177.888885
20170412EDL_L02_cell04_c2.spc EDL L02 c 182.333328 177.888885
20170413EDL_L03_cell07_n1.spc EDL L03 n 329.777771 335.222229
20170413EDL_L03_cell07_n2.spc EDL L03 n 241.000000 241.000000
20170413EDL_L03_cell07_c1.spc EDL L03 c 194.444443 199.444443
20170413LDL_L03_cell06_n3.spc LDL L03 n 197.111115 191.666672
20170413LDL_L03_cell06_c1.spc LDL L03 c 165.333328 166.777771
20170413LDL_L03_cell06_c2.spc LDL L03 c 166.111115 171.777771
20170412EDL_L02_cell05_n2.spc EDL L02 n 199.666672 203.333328
20170413LDL_L03_cell06_c3.spc LDL L03 c 201.222229 199.666687
20170411STD_L02_cell07_n1.spc STD L02 n 217.888885 228.666672
20170411STD_L01_cell04_n2.spc STD L01 n 225.444443 229.666672
20170411STD_L01_cell04_n3.spc STD L01 n 191.111115 178.333328
20170411STD_L01_cell04_c3.spc STD L01 c 162.000000 161.222229
20170411STD_L02_cell03_n2.spc STD L02 n 235.777771 230.000000
20170413STD_L03_cell01_n1.spc STD L03 n 239.333313 234.333328
20170413STD_L03_cell01_n2.spc STD L03 n 273.777771 267.888885
20170411STD_L02_cell03_c3.spc STD L02 c 205.000000 196.555557
20170413STD_L03_cell01_c3.spc STD L03 c 192.777771 194.666672
20170413LDL_L03_cell01_c3.spc LDL L03 c 182.777771 181.777771
20170411STD_L02_cell05_n1.spc STD L02 n 256.222229 251.333328
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 301.666656 292.555542
20170411EPA_L01_cell07_n3.spc EPA L01 n 232.666672 233.444443
20170413STD_L03_cell07_c1.spc STD L03 c 185.222229 189.888885
20170413LDL_L03_cell02_c2.spc LDL L03 c 191.222229 195.777771
20170413LDL_L03_cell02_c3.spc LDL L03 c 197.555557 199.666672
20170410LDL_L01_cell06_c3.spc LDL L01 c 166.555557 161.000000
20170410LDL_L01_cell02_n1.spc LDL L01 n 304.000000 305.777771
20170410LDL_L01_cell02_c1.spc LDL L01 c 342.222229 342.222229
20170413EPA_L03_cell01_n1.spc EPA L03 n 262.777771 259.444458
20170413EPA_L03_cell01_n2.spc EPA L03 n 228.777771 218.000000
20170413EPA_L03_cell01_c1.spc EPA L03 c 182.777771 179.666672
20170413EPA_L03_cell01_c2.spc EPA L03 c 173.777771 169.000000
20170413EPA_L03_cell01_c3.spc EPA L03 c 172.444443 160.888885
20170410LDL_L01_cell03_n3.spc LDL L01 n 225.222229 227.666672
20170410EDL_L01_cell04_n1.spc EDL L01 n 194.888885 192.555557
20170410EDL_L01_cell04_n3.spc EDL L01 n 203.888901 201.888885
20170410EDL_L01_cell04_c1.spc EDL L01 c 186.777771 185.000000
20170410EDL_L01_cell04_c2.spc EDL L01 c 192.222229 203.555557
20170413EPA_L03_cell02_n1.spc EPA L03 n 205.777771 204.111115
20170413EPA_L03_cell06_n2.spc EPA L03 n 231.111099 223.111115
20170413EPA_L03_cell06_n3.spc EPA L03 n 204.000015 197.333328
20170411EPA_L01_cell03_c1.spc EPA L01 c 186.444427 182.333344
20170411EPA_L01_cell03_c2.spc EPA L01 c 207.555557 202.888885
20170411EPA_L01_cell03_c3.spc EPA L01 c 173.000000 179.000000
20170411STD_L01_cell06_n2.spc STD L01 n 225.000000 218.555557
20170411STD_L01_cell06_c1.spc STD L01 c 166.555557 172.555557
20170411STD_L01_cell06_c2.spc STD L01 c 165.666672 172.222229
20170413LDL_L03_cell07_n1.spc LDL L03 n 227.444443 233.444443
20170413LDL_L03_cell07_n3.spc LDL L03 n 231.888885 232.444427
20170413LDL_L03_cell07_c1.spc LDL L03 c 195.666687 204.777771
415.370331 417.895966 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 274.000000 282.777771
20170410LDL_L01_cell01_n2.spc LDL L01 n 348.555542 388.111115
20170410LDL_L01_cell01_c1.spc LDL L01 c 215.888885 215.888885
20170413EPA_L03_cell07_n2.spc EPA L03 n 271.555542 283.777771
20170413EPA_L03_cell07_n3.spc EPA L03 n 266.888885 263.666656
20170413EPA_L03_cell07_c1.spc EPA L03 c 195.222229 181.777771
20170413LDL_L03_cell05_c1.spc LDL L03 c 190.000000 185.555542
20170413LDL_L03_cell05_c3.spc LDL L03 c 182.666687 181.555557
20170412EDL_L02_cell04_n1.spc EDL L02 n 219.555573 211.888885
20170412EDL_L02_cell04_c1.spc EDL L02 c 180.888901 180.888901
20170412EDL_L02_cell04_c2.spc EDL L02 c 180.888901 180.888901
20170413EDL_L03_cell07_n1.spc EDL L03 n 325.111115 328.444458
20170413EDL_L03_cell07_n2.spc EDL L03 n 233.000000 246.333313
20170413EDL_L03_cell07_c1.spc EDL L03 c 199.777771 195.777771
20170413LDL_L03_cell06_n3.spc LDL L03 n 196.000000 196.555573
20170413LDL_L03_cell06_c1.spc LDL L03 c 166.000000 169.333328
20170413LDL_L03_cell06_c2.spc LDL L03 c 164.000015 167.333328
20170412EDL_L02_cell05_n2.spc EDL L02 n 206.000000 201.333328
20170413LDL_L03_cell06_c3.spc LDL L03 c 202.444443 200.888885
20170411STD_L02_cell07_n1.spc STD L02 n 222.666687 225.111115
20170411STD_L01_cell04_n2.spc STD L01 n 219.777771 222.111115
20170411STD_L01_cell04_n3.spc STD L01 n 183.333328 178.555557
20170411STD_L01_cell04_c3.spc STD L01 c 161.111115 161.777771
20170411STD_L02_cell03_n2.spc STD L02 n 229.555557 225.666672
20170413STD_L03_cell01_n1.spc STD L03 n 228.111130 237.000000
20170413STD_L03_cell01_n2.spc STD L03 n 270.111115 259.111084
20170411STD_L02_cell03_c3.spc STD L02 c 197.222214 193.222229
20170413STD_L03_cell01_c3.spc STD L03 c 191.222229 190.666672
20170413LDL_L03_cell01_c3.spc LDL L03 c 176.888885 191.222214
20170411STD_L02_cell05_n1.spc STD L02 n 255.777771 252.222229
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 288.555542 296.888885
20170411EPA_L01_cell07_n3.spc EPA L01 n 229.555557 230.111130
20170413STD_L03_cell07_c1.spc STD L03 c 187.222229 185.555557
20170413LDL_L03_cell02_c2.spc LDL L03 c 191.444443 191.666672
20170413LDL_L03_cell02_c3.spc LDL L03 c 201.222229 195.444443
20170410LDL_L01_cell06_c3.spc LDL L01 c 164.555557 168.111115
20170410LDL_L01_cell02_n1.spc LDL L01 n 314.000000 316.888855
20170410LDL_L01_cell02_c1.spc LDL L01 c 341.888916 348.666656
20170413EPA_L03_cell01_n1.spc EPA L03 n 263.444458 252.888885
20170413EPA_L03_cell01_n2.spc EPA L03 n 231.666672 225.222229
20170413EPA_L03_cell01_c1.spc EPA L03 c 181.000000 181.000000
20170413EPA_L03_cell01_c2.spc EPA L03 c 172.000000 169.888885
20170413EPA_L03_cell01_c3.spc EPA L03 c 168.222229 165.333328
20170410LDL_L01_cell03_n3.spc LDL L01 n 231.666672 222.111099
20170410EDL_L01_cell04_n1.spc EDL L01 n 197.222229 196.333328
20170410EDL_L01_cell04_n3.spc EDL L01 n 206.444443 205.111115
20170410EDL_L01_cell04_c1.spc EDL L01 c 182.777786 180.444443
20170410EDL_L01_cell04_c2.spc EDL L01 c 196.444443 200.444443
20170413EPA_L03_cell02_n1.spc EPA L03 n 198.444443 198.888870
20170413EPA_L03_cell06_n2.spc EPA L03 n 228.666672 212.666672
20170413EPA_L03_cell06_n3.spc EPA L03 n 199.222229 203.444458
20170411EPA_L01_cell03_c1.spc EPA L01 c 186.555557 180.333328
20170411EPA_L01_cell03_c2.spc EPA L01 c 210.666672 204.888885
20170411EPA_L01_cell03_c3.spc EPA L01 c 171.777771 172.444443
20170411STD_L01_cell06_n2.spc STD L01 n 217.555557 216.777771
20170411STD_L01_cell06_c1.spc STD L01 c 171.555557 173.222229
20170411STD_L01_cell06_c2.spc STD L01 c 167.444443 164.111115
20170413LDL_L03_cell07_n1.spc LDL L03 n 236.555557 232.222229
20170413LDL_L03_cell07_n3.spc LDL L03 n 225.333328 233.000000
20170413LDL_L03_cell07_c1.spc LDL L03 c 209.444443 206.666687
420.420746 422.943268 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 272.666656 278.888855
20170410LDL_L01_cell01_n2.spc LDL L01 n 458.111115 463.666656
20170410LDL_L01_cell01_c1.spc LDL L01 c 213.999985 215.777771
20170413EPA_L03_cell07_n2.spc EPA L03 n 271.888885 269.111115
20170413EPA_L03_cell07_n3.spc EPA L03 n 261.222229 263.222229
20170413EPA_L03_cell07_c1.spc EPA L03 c 191.888885 182.666656
20170413LDL_L03_cell05_c1.spc LDL L03 c 189.222229 191.333328
20170413LDL_L03_cell05_c3.spc LDL L03 c 172.111115 181.333328
20170412EDL_L02_cell04_n1.spc EDL L02 n 216.666672 212.222229
20170412EDL_L02_cell04_c1.spc EDL L02 c 176.111115 180.333328
20170412EDL_L02_cell04_c2.spc EDL L02 c 176.111115 180.333328
20170413EDL_L03_cell07_n1.spc EDL L03 n 322.111115 312.222229
20170413EDL_L03_cell07_n2.spc EDL L03 n 237.222229 243.222229
20170413EDL_L03_cell07_c1.spc EDL L03 c 204.333344 204.333313
20170413LDL_L03_cell06_n3.spc LDL L03 n 204.888885 200.888901
20170413LDL_L03_cell06_c1.spc LDL L03 c 170.000000 178.222229
20170413LDL_L03_cell06_c2.spc LDL L03 c 170.666672 176.666672
20170412EDL_L02_cell05_n2.spc EDL L02 n 204.999985 200.777771
20170413LDL_L03_cell06_c3.spc LDL L03 c 208.333328 202.111115
20170411STD_L02_cell07_n1.spc STD L02 n 224.333328 221.222229
20170411STD_L01_cell04_n2.spc STD L01 n 214.444443 213.222229
20170411STD_L01_cell04_n3.spc STD L01 n 184.666672 177.666687
20170411STD_L01_cell04_c3.spc STD L01 c 157.444443 159.222229
20170411STD_L02_cell03_n2.spc STD L02 n 229.111130 225.333328
20170413STD_L03_cell01_n1.spc STD L03 n 229.111115 229.666672
20170413STD_L03_cell01_n2.spc STD L03 n 260.222260 261.444458
20170411STD_L02_cell03_c3.spc STD L02 c 196.222229 195.888885
20170413STD_L03_cell01_c3.spc STD L03 c 192.666656 194.000000
20170413LDL_L03_cell01_c3.spc LDL L03 c 187.777771 188.111115
20170411STD_L02_cell05_n1.spc STD L02 n 254.222229 250.555557
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 291.777771 301.333313
20170411EPA_L01_cell07_n3.spc EPA L01 n 223.666687 226.000000
20170413STD_L03_cell07_c1.spc STD L03 c 180.000000 179.333328
20170413LDL_L03_cell02_c2.spc LDL L03 c 189.666672 186.888885
20170413LDL_L03_cell02_c3.spc LDL L03 c 198.222229 198.222229
20170410LDL_L01_cell06_c3.spc LDL L01 c 169.000000 168.333344
20170410LDL_L01_cell02_n1.spc LDL L01 n 322.333313 334.888855
20170410LDL_L01_cell02_c1.spc LDL L01 c 348.666656 343.000000
20170413EPA_L03_cell01_n1.spc EPA L03 n 254.333328 251.333328
20170413EPA_L03_cell01_n2.spc EPA L03 n 221.888885 222.111115
20170413EPA_L03_cell01_c1.spc EPA L03 c 174.333328 173.777771
20170413EPA_L03_cell01_c2.spc EPA L03 c 162.333328 173.555557
20170413EPA_L03_cell01_c3.spc EPA L03 c 173.888901 171.222229
20170410LDL_L01_cell03_n3.spc LDL L01 n 230.111115 218.555557
20170410EDL_L01_cell04_n1.spc EDL L01 n 202.333328 201.888885
20170410EDL_L01_cell04_n3.spc EDL L01 n 204.555542 203.888901
20170410EDL_L01_cell04_c1.spc EDL L01 c 183.222229 181.777771
20170410EDL_L01_cell04_c2.spc EDL L01 c 193.999985 193.000000
20170413EPA_L03_cell02_n1.spc EPA L03 n 198.111115 200.222229
20170413EPA_L03_cell06_n2.spc EPA L03 n 224.333328 217.888885
20170413EPA_L03_cell06_n3.spc EPA L03 n 197.555557 205.777771
20170411EPA_L01_cell03_c1.spc EPA L01 c 190.000000 181.555557
20170411EPA_L01_cell03_c2.spc EPA L01 c 207.444443 214.222229
20170411EPA_L01_cell03_c3.spc EPA L01 c 175.111115 175.888885
20170411STD_L01_cell06_n2.spc STD L01 n 217.444443 207.444443
20170411STD_L01_cell06_c1.spc STD L01 c 165.888885 165.222214
20170411STD_L01_cell06_c2.spc STD L01 c 163.333328 165.222229
20170413LDL_L03_cell07_n1.spc LDL L03 n 225.555557 232.111099
20170413LDL_L03_cell07_n3.spc LDL L03 n 233.777771 228.666672
20170413LDL_L03_cell07_c1.spc LDL L03 c 206.777786 205.666672
... 3784.909668 \
filename medium plate comp ...
20170410LDL_L01_cell01_n1.spc LDL L01 n ... 98.935760
20170410LDL_L01_cell01_n2.spc LDL L01 n ... 102.091789
20170410LDL_L01_cell01_c1.spc LDL L01 c ... 99.060684
20170413EPA_L03_cell07_n2.spc EPA L03 n ... 104.405922
20170413EPA_L03_cell07_n3.spc EPA L03 n ... 104.529579
20170413EPA_L03_cell07_c1.spc EPA L03 c ... 106.588158
20170413LDL_L03_cell05_c1.spc LDL L03 c ... 105.306328
20170413LDL_L03_cell05_c3.spc LDL L03 c ... 102.970345
20170412EDL_L02_cell04_n1.spc EDL L02 n ... 103.814987
20170412EDL_L02_cell04_c1.spc EDL L02 c ... 102.062042
20170412EDL_L02_cell04_c2.spc EDL L02 c ... 102.062042
20170413EDL_L03_cell07_n1.spc EDL L03 n ... 106.797691
20170413EDL_L03_cell07_n2.spc EDL L03 n ... 108.615822
20170413EDL_L03_cell07_c1.spc EDL L03 c ... 105.457550
20170413LDL_L03_cell06_n3.spc LDL L03 n ... 97.519386
20170413LDL_L03_cell06_c1.spc LDL L03 c ... 98.715446
20170413LDL_L03_cell06_c2.spc LDL L03 c ... 97.983696
20170412EDL_L02_cell05_n2.spc EDL L02 n ... 105.795158
20170413LDL_L03_cell06_c3.spc LDL L03 c ... 105.176163
20170411STD_L02_cell07_n1.spc STD L02 n ... 110.627029
20170411STD_L01_cell04_n2.spc STD L01 n ... 110.940414
20170411STD_L01_cell04_n3.spc STD L01 n ... 106.181938
20170411STD_L01_cell04_c3.spc STD L01 c ... 103.583786
20170411STD_L02_cell03_n2.spc STD L02 n ... 113.090477
20170413STD_L03_cell01_n1.spc STD L03 n ... 104.816444
20170413STD_L03_cell01_n2.spc STD L03 n ... 107.491089
20170411STD_L02_cell03_c3.spc STD L02 c ... 109.139290
20170413STD_L03_cell01_c3.spc STD L03 c ... 105.018341
20170413LDL_L03_cell01_c3.spc LDL L03 c ... 105.028412
20170411STD_L02_cell05_n1.spc STD L02 n ... 109.543045
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n ... 105.800438
20170411EPA_L01_cell07_n3.spc EPA L01 n ... 103.724518
20170413STD_L03_cell07_c1.spc STD L03 c ... 97.945137
20170413LDL_L03_cell02_c2.spc LDL L03 c ... 101.454880
20170413LDL_L03_cell02_c3.spc LDL L03 c ... 106.495506
20170410LDL_L01_cell06_c3.spc LDL L01 c ... 104.168037
20170410LDL_L01_cell02_n1.spc LDL L01 n ... 106.980110
20170410LDL_L01_cell02_c1.spc LDL L01 c ... 105.599625
20170413EPA_L03_cell01_n1.spc EPA L03 n ... 107.803780
20170413EPA_L03_cell01_n2.spc EPA L03 n ... 108.526428
20170413EPA_L03_cell01_c1.spc EPA L03 c ... 105.956154
20170413EPA_L03_cell01_c2.spc EPA L03 c ... 101.214073
20170413EPA_L03_cell01_c3.spc EPA L03 c ... 102.472000
20170410LDL_L01_cell03_n3.spc LDL L01 n ... 101.530716
20170410EDL_L01_cell04_n1.spc EDL L01 n ... 105.884605
20170410EDL_L01_cell04_n3.spc EDL L01 n ... 92.602135
20170410EDL_L01_cell04_c1.spc EDL L01 c ... 100.366028
20170410EDL_L01_cell04_c2.spc EDL L01 c ... 101.604950
20170413EPA_L03_cell02_n1.spc EPA L03 n ... 101.196892
20170413EPA_L03_cell06_n2.spc EPA L03 n ... 105.323906
20170413EPA_L03_cell06_n3.spc EPA L03 n ... 105.444519
20170411EPA_L01_cell03_c1.spc EPA L01 c ... 108.875954
20170411EPA_L01_cell03_c2.spc EPA L01 c ... 107.302834
20170411EPA_L01_cell03_c3.spc EPA L01 c ... 111.274254
20170411STD_L01_cell06_n2.spc STD L01 n ... 107.752464
20170411STD_L01_cell06_c1.spc STD L01 c ... 107.919830
20170411STD_L01_cell06_c2.spc STD L01 c ... 106.474442
20170413LDL_L03_cell07_n1.spc LDL L03 n ... 107.447830
20170413LDL_L03_cell07_n3.spc LDL L03 n ... 110.121773
20170413LDL_L03_cell07_c1.spc LDL L03 c ... 110.397018
3786.437256 3787.964111 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 97.370834 96.694794
20170410LDL_L01_cell01_n2.spc LDL L01 n 104.197861 99.637276
20170410LDL_L01_cell01_c1.spc LDL L01 c 105.055145 98.716270
20170413EPA_L03_cell07_n2.spc EPA L03 n 104.624397 101.731773
20170413EPA_L03_cell07_n3.spc EPA L03 n 107.747925 105.410721
20170413EPA_L03_cell07_c1.spc EPA L03 c 110.256302 107.368904
20170413LDL_L03_cell05_c1.spc LDL L03 c 102.519356 107.065704
20170413LDL_L03_cell05_c3.spc LDL L03 c 104.852715 103.623962
20170412EDL_L02_cell04_n1.spc EDL L02 n 104.364807 102.914612
20170412EDL_L02_cell04_c1.spc EDL L02 c 106.169197 106.720779
20170412EDL_L02_cell04_c2.spc EDL L02 c 106.169197 106.720779
20170413EDL_L03_cell07_n1.spc EDL L03 n 105.683098 103.568481
20170413EDL_L03_cell07_n2.spc EDL L03 n 114.504448 110.504196
20170413EDL_L03_cell07_c1.spc EDL L03 c 103.008034 104.780746
20170413LDL_L03_cell06_n3.spc LDL L03 n 100.842964 96.944321
20170413LDL_L03_cell06_c1.spc LDL L03 c 102.713333 101.822342
20170413LDL_L03_cell06_c2.spc LDL L03 c 96.307922 98.076584
20170412EDL_L02_cell05_n2.spc EDL L02 n 104.797844 108.467194
20170413LDL_L03_cell06_c3.spc LDL L03 c 104.836159 103.496147
20170411STD_L02_cell07_n1.spc STD L02 n 108.966408 112.083565
20170411STD_L01_cell04_n2.spc STD L01 n 109.377213 111.036232
20170411STD_L01_cell04_n3.spc STD L01 n 105.066833 104.840614
20170411STD_L01_cell04_c3.spc STD L01 c 102.357147 103.352730
20170411STD_L02_cell03_n2.spc STD L02 n 106.756157 114.755180
20170413STD_L03_cell01_n1.spc STD L03 n 104.476692 106.248039
20170413STD_L03_cell01_n2.spc STD L03 n 110.708511 110.703697
20170411STD_L02_cell03_c3.spc STD L02 c 107.249786 106.138062
20170413STD_L03_cell01_c3.spc STD L03 c 103.236855 103.455360
20170413LDL_L03_cell01_c3.spc LDL L03 c 103.910583 103.348297
20170411STD_L02_cell05_n1.spc STD L02 n 107.102615 112.217751
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 102.572540 104.455772
20170411EPA_L01_cell07_n3.spc EPA L01 n 101.384628 103.933632
20170413STD_L03_cell07_c1.spc STD L03 c 99.603455 98.261772
20170413LDL_L03_cell02_c2.spc LDL L03 c 103.669205 101.550201
20170413LDL_L03_cell02_c3.spc LDL L03 c 104.821945 101.815041
20170410LDL_L01_cell06_c3.spc LDL L01 c 103.057091 100.279457
20170410LDL_L01_cell02_n1.spc LDL L01 n 101.302765 104.403191
20170410LDL_L01_cell02_c1.spc LDL L01 c 105.253181 107.573395
20170413EPA_L03_cell01_n1.spc EPA L03 n 104.691223 106.356422
20170413EPA_L03_cell01_n2.spc EPA L03 n 106.079147 109.742973
20170413EPA_L03_cell01_c1.spc EPA L03 c 106.839714 101.056610
20170413EPA_L03_cell01_c2.spc EPA L03 c 110.543266 105.316917
20170413EPA_L03_cell01_c3.spc EPA L03 c 103.467613 102.129890
20170410LDL_L01_cell03_n3.spc LDL L01 n 100.746498 95.740044
20170410EDL_L01_cell04_n1.spc EDL L01 n 105.775375 104.999504
20170410EDL_L01_cell04_n3.spc EDL L01 n 92.810089 94.018051
20170410EDL_L01_cell04_c1.spc EDL L01 c 104.805298 97.689011
20170410EDL_L01_cell04_c2.spc EDL L01 c 105.489159 104.373337
20170413EPA_L03_cell02_n1.spc EPA L03 n 103.525589 105.187622
20170413EPA_L03_cell06_n2.spc EPA L03 n 106.766785 112.320786
20170413EPA_L03_cell06_n3.spc EPA L03 n 101.880959 102.095184
20170411EPA_L01_cell03_c1.spc EPA L01 c 106.986618 109.875084
20170411EPA_L01_cell03_c2.spc EPA L01 c 111.624107 109.834244
20170411EPA_L01_cell03_c3.spc EPA L01 c 111.940483 109.717834
20170411STD_L01_cell06_n2.spc STD L01 n 109.530716 109.420059
20170411STD_L01_cell06_c1.spc STD L01 c 104.473976 103.917007
20170411STD_L01_cell06_c2.spc STD L01 c 106.806175 106.360138
20170413LDL_L03_cell07_n1.spc LDL L03 n 110.563965 107.346741
20170413LDL_L03_cell07_n3.spc LDL L03 n 108.454147 107.342072
20170413LDL_L03_cell07_c1.spc LDL L03 c 106.725052 107.275299
3789.490967 3791.018066 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 96.129852 95.453812
20170410LDL_L01_cell01_n2.spc LDL L01 n 99.743355 101.849426
20170410LDL_L01_cell01_c1.spc LDL L01 c 104.044067 98.705200
20170413EPA_L03_cell07_n2.spc EPA L03 n 105.061371 106.390961
20170413EPA_L03_cell07_n3.spc EPA L03 n 103.962425 105.847450
20170413EPA_L03_cell07_c1.spc EPA L03 c 108.592606 109.816307
20170413LDL_L03_cell05_c1.spc LDL L03 c 99.500969 104.158447
20170413LDL_L03_cell05_c3.spc LDL L03 c 104.395218 99.610909
20170412EDL_L02_cell04_n1.spc EDL L02 n 102.464432 96.903145
20170412EDL_L02_cell04_c1.spc EDL L02 c 103.494583 104.379509
20170412EDL_L02_cell04_c2.spc EDL L02 c 103.494583 104.379509
20170413EDL_L03_cell07_n1.spc EDL L03 n 100.787224 108.672615
20170413EDL_L03_cell07_n2.spc EDL L03 n 110.948387 106.059227
20170413EDL_L03_cell07_c1.spc EDL L03 c 104.220116 101.548370
20170413LDL_L03_cell06_n3.spc LDL L03 n 96.379021 96.369278
20170413LDL_L03_cell06_c1.spc LDL L03 c 106.375801 102.484802
20170413LDL_L03_cell06_c2.spc LDL L03 c 95.845245 97.725021
20170412EDL_L02_cell05_n2.spc EDL L02 n 107.469879 107.694778
20170413LDL_L03_cell06_c3.spc LDL L03 c 103.600586 100.482796
20170411STD_L02_cell07_n1.spc STD L02 n 110.756271 112.651199
20170411STD_L01_cell04_n2.spc STD L01 n 105.361938 109.909851
20170411STD_L01_cell04_n3.spc STD L01 n 101.836632 103.610397
20170411STD_L01_cell04_c3.spc STD L01 c 105.126076 103.788322
20170411STD_L02_cell03_n2.spc STD L02 n 108.531998 110.086571
20170413STD_L03_cell01_n1.spc STD L03 n 103.797188 104.124100
20170413STD_L03_cell01_n2.spc STD L03 n 114.698906 105.249664
20170411STD_L02_cell03_c3.spc STD L02 c 106.470772 104.914604
20170413STD_L03_cell01_c3.spc STD L03 c 104.673866 101.447945
20170413LDL_L03_cell01_c3.spc LDL L03 c 100.563805 103.223732
20170411STD_L02_cell05_n1.spc STD L02 n 109.999557 111.892456
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 107.116783 101.555565
20170411EPA_L01_cell07_n3.spc EPA L01 n 100.815964 105.698303
20170413STD_L03_cell07_c1.spc STD L03 c 99.475662 98.800659
20170413LDL_L03_cell02_c2.spc LDL L03 c 102.431198 104.756645
20170413LDL_L03_cell02_c3.spc LDL L03 c 94.808151 102.356812
20170410LDL_L01_cell06_c3.spc LDL L01 c 108.168495 99.946442
20170410LDL_L01_cell02_n1.spc LDL L01 n 104.948059 106.381828
20170410LDL_L01_cell02_c1.spc LDL L01 c 106.893600 109.436035
20170413EPA_L03_cell01_n1.spc EPA L03 n 110.243858 107.464630
20170413EPA_L03_cell01_n2.spc EPA L03 n 106.740150 107.959534
20170413EPA_L03_cell01_c1.spc EPA L03 c 101.162392 107.268173
20170413EPA_L03_cell01_c2.spc EPA L03 c 106.312790 105.975319
20170413EPA_L03_cell01_c3.spc EPA L03 c 108.569946 107.898895
20170410LDL_L01_cell03_n3.spc LDL L01 n 101.289146 98.616035
20170410EDL_L01_cell04_n1.spc EDL L01 n 107.668060 106.781067
20170410EDL_L01_cell04_n3.spc EDL L01 n 93.448227 95.322845
20170410EDL_L01_cell04_c1.spc EDL L01 c 107.128288 102.012001
20170410EDL_L01_cell04_c2.spc EDL L01 c 105.368660 106.586174
20170413EPA_L03_cell02_n1.spc EPA L03 n 101.071877 107.845024
20170413EPA_L03_cell06_n2.spc EPA L03 n 105.652557 107.095436
20170413EPA_L03_cell06_n3.spc EPA L03 n 99.642738 100.412514
20170411EPA_L01_cell03_c1.spc EPA L01 c 108.652420 107.540886
20170411EPA_L01_cell03_c2.spc EPA L01 c 112.155502 110.254532
20170411EPA_L01_cell03_c3.spc EPA L01 c 106.050728 108.939194
20170411STD_L01_cell06_n2.spc STD L01 n 106.087204 113.643234
20170411STD_L01_cell06_c1.spc STD L01 c 108.248924 103.025284
20170411STD_L01_cell06_c2.spc STD L01 c 109.025215 104.468063
20170413LDL_L03_cell07_n1.spc LDL L03 n 108.018410 110.467865
20170413LDL_L03_cell07_n3.spc LDL L03 n 111.118889 109.340141
20170413LDL_L03_cell07_c1.spc LDL L03 c 106.269989 107.820244
3792.543945 3794.069336 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 97.222229 97.323952
20170410LDL_L01_cell01_n2.spc LDL L01 n 101.955498 101.172699
20170410LDL_L01_cell01_c1.spc LDL L01 c 102.255219 102.471909
20170413EPA_L03_cell07_n2.spc EPA L03 n 101.165016 101.494591
20170413EPA_L03_cell07_n3.spc EPA L03 n 106.621361 105.061943
20170413EPA_L03_cell07_c1.spc EPA L03 c 106.262245 106.597061
20170413LDL_L03_cell05_c1.spc LDL L03 c 100.704796 106.028938
20170413LDL_L03_cell05_c3.spc LDL L03 c 103.937721 99.264519
20170412EDL_L02_cell04_n1.spc EDL L02 n 103.675179 105.558334
20170412EDL_L02_cell04_c1.spc EDL L02 c 102.486641 105.038231
20170412EDL_L02_cell04_c2.spc EDL L02 c 102.486641 105.038231
20170413EDL_L03_cell07_n1.spc EDL L03 n 106.891342 103.221191
20170413EDL_L03_cell07_n2.spc EDL L03 n 112.947868 107.058731
20170413EDL_L03_cell07_c1.spc EDL L03 c 100.876625 102.982674
20170413LDL_L03_cell06_n3.spc LDL L03 n 98.692863 99.349770
20170413LDL_L03_cell06_c1.spc LDL L03 c 102.149361 100.369476
20170413LDL_L03_cell06_c2.spc LDL L03 c 100.604797 100.817902
20170412EDL_L02_cell05_n2.spc EDL L02 n 105.808578 108.255714
20170413LDL_L03_cell06_c3.spc LDL L03 c 102.809456 104.469452
20170411STD_L02_cell07_n1.spc STD L02 n 107.101692 109.663300
20170411STD_L01_cell04_n2.spc STD L01 n 104.568871 109.227898
20170411STD_L01_cell04_n3.spc STD L01 n 101.828651 104.491310
20170411STD_L01_cell04_c3.spc STD L01 c 106.561684 103.779488
20170411STD_L02_cell03_n2.spc STD L02 n 110.530037 112.751282
20170413STD_L03_cell01_n1.spc STD L03 n 106.562126 104.777924
20170413STD_L03_cell01_n2.spc STD L03 n 112.244873 114.017830
20170411STD_L02_cell03_c3.spc STD L02 c 110.358437 106.913391
20170413STD_L03_cell01_c3.spc STD L03 c 102.333138 102.662750
20170413LDL_L03_cell01_c3.spc LDL L03 c 103.772568 104.099182
20170411STD_L02_cell05_n1.spc STD L02 n 110.340919 112.678284
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 105.438789 108.433128
20170411EPA_L01_cell07_n3.spc EPA L01 n 99.691750 104.796295
20170413STD_L03_cell07_c1.spc STD L03 c 101.014542 99.561745
20170413LDL_L03_cell02_c2.spc LDL L03 c 100.415421 105.740860
20170413LDL_L03_cell02_c3.spc LDL L03 c 97.238800 101.454124
20170410LDL_L01_cell06_c3.spc LDL L01 c 101.724373 101.835625
20170410LDL_L01_cell02_n1.spc LDL L01 n 107.371147 103.582687
20170410LDL_L01_cell02_c1.spc LDL L01 c 108.978477 103.520920
20170413EPA_L03_cell01_n1.spc EPA L03 n 105.796509 106.461723
20170413EPA_L03_cell01_n2.spc EPA L03 n 106.734467 107.176071
20170413EPA_L03_cell01_c1.spc EPA L03 c 106.596184 101.146400
20170413EPA_L03_cell01_c2.spc EPA L03 c 106.748970 104.078163
20170413EPA_L03_cell01_c3.spc EPA L03 c 102.450066 102.334557
20170410LDL_L01_cell03_n3.spc LDL L01 n 97.831802 102.047577
20170410EDL_L01_cell04_n1.spc EDL L01 n 105.227402 105.007072
20170410EDL_L01_cell04_n3.spc EDL L01 n 94.308586 97.849861
20170410EDL_L01_cell04_c1.spc EDL L01 c 101.340149 106.446083
20170410EDL_L01_cell04_c2.spc EDL L01 c 105.248154 108.243469
20170413EPA_L03_cell02_n1.spc EPA L03 n 100.507065 100.502434
20170413EPA_L03_cell06_n2.spc EPA L03 n 106.760559 106.759003
20170413EPA_L03_cell06_n3.spc EPA L03 n 102.515633 101.952072
20170411EPA_L01_cell03_c1.spc EPA L01 c 106.873772 106.984444
20170411EPA_L01_cell03_c2.spc EPA L01 c 110.353577 111.119270
20170411EPA_L01_cell03_c3.spc EPA L01 c 109.716522 106.382767
20170411STD_L01_cell06_n2.spc STD L01 n 110.532593 109.310844
20170411STD_L01_cell06_c1.spc STD L01 c 104.912750 102.689117
20170411STD_L01_cell06_c2.spc STD L01 c 105.577576 107.909325
20170413LDL_L03_cell07_n1.spc LDL L03 n 106.361763 108.366768
20170413LDL_L03_cell07_n3.spc LDL L03 n 109.116959 106.338219
20170413LDL_L03_cell07_c1.spc LDL L03 c 112.037163 110.142960
3795.594482 3797.119141 \
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 93.425697 95.749657
20170410LDL_L01_cell01_n2.spc LDL L01 n 101.612099 104.051521
20170410LDL_L01_cell01_c1.spc LDL L01 c 100.910805 103.683052
20170413EPA_L03_cell07_n2.spc EPA L03 n 107.157532 105.042671
20170413EPA_L03_cell07_n3.spc EPA L03 n 106.280304 103.832001
20170413EPA_L03_cell07_c1.spc EPA L03 c 102.820763 108.155586
20170413LDL_L03_cell05_c1.spc LDL L03 c 101.019737 101.232758
20170413LDL_L03_cell05_c3.spc LDL L03 c 102.258003 104.584793
20170412EDL_L02_cell04_n1.spc EDL L02 n 107.774826 103.102417
20170412EDL_L02_cell04_c1.spc EDL L02 c 102.478714 105.252525
20170412EDL_L02_cell04_c2.spc EDL L02 c 102.478714 105.252525
20170413EDL_L03_cell07_n1.spc EDL L03 n 103.884354 104.436424
20170413EDL_L03_cell07_n2.spc EDL L03 n 107.058464 110.169312
20170413EDL_L03_cell07_c1.spc EDL L03 c 103.533142 102.305855
20170413LDL_L03_cell06_n3.spc LDL L03 n 98.673355 97.996948
20170413LDL_L03_cell06_c1.spc LDL L03 c 102.478485 103.143044
20170413LDL_L03_cell06_c2.spc LDL L03 c 98.586555 100.133018
20170412EDL_L02_cell05_n2.spc EDL L02 n 107.258392 106.149971
20170413LDL_L03_cell06_c3.spc LDL L03 c 100.685005 102.233887
20170411STD_L02_cell07_n1.spc STD L02 n 110.113785 114.786491
20170411STD_L01_cell04_n2.spc STD L01 n 107.220268 104.657066
20170411STD_L01_cell04_n3.spc STD L01 n 105.820656 104.038895
20170411STD_L01_cell04_c3.spc STD L01 c 103.330620 100.659546
20170411STD_L02_cell03_n2.spc STD L02 n 107.639206 111.527115
20170413STD_L03_cell01_n1.spc STD L03 n 100.882622 104.320648
20170413STD_L03_cell01_n2.spc STD L03 n 112.235252 106.563789
20170411STD_L02_cell03_c3.spc STD L02 c 107.468323 106.467712
20170413STD_L03_cell01_c3.spc STD L03 c 105.214600 105.877548
20170413LDL_L03_cell01_c3.spc LDL L03 c 104.648018 102.863518
20170411STD_L02_cell05_n1.spc STD L02 n 108.571198 110.130760
... ... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 102.094124 107.310699
20170411EPA_L01_cell07_n3.spc EPA L01 n 103.234184 105.005417
20170413STD_L03_cell07_c1.spc STD L03 c 100.108963 96.211731
20170413LDL_L03_cell02_c2.spc LDL L03 c 100.399628 101.169518
20170413LDL_L03_cell02_c3.spc LDL L03 c 105.113892 100.218109
20170410LDL_L01_cell06_c3.spc LDL L01 c 101.502441 100.058151
20170410LDL_L01_cell02_n1.spc LDL L01 n 102.794228 102.339104
20170410LDL_L01_cell02_c1.spc LDL L01 c 99.730019 104.828003
20170413EPA_L03_cell01_n1.spc EPA L03 n 106.571388 106.903259
20170413EPA_L03_cell01_n2.spc EPA L03 n 104.284355 110.614853
20170413EPA_L03_cell01_c1.spc EPA L03 c 109.474411 100.691315
20170413EPA_L03_cell01_c2.spc EPA L03 c 107.074028 108.625458
20170413EPA_L03_cell01_c3.spc EPA L03 c 103.219063 101.992455
20170410LDL_L01_cell03_n3.spc LDL L01 n 100.818901 100.145782
20170410EDL_L01_cell04_n1.spc EDL L01 n 105.897850 104.899742
20170410EDL_L01_cell04_n3.spc EDL L01 n 95.946716 97.154671
20170410EDL_L01_cell04_c1.spc EDL L01 c 100.885353 102.991280
20170410EDL_L01_cell04_c2.spc EDL L01 c 99.460999 103.567421
20170413EPA_L03_cell02_n1.spc EPA L03 n 105.720016 104.604271
20170413EPA_L03_cell06_n2.spc EPA L03 n 108.090759 109.978104
20170413EPA_L03_cell06_n3.spc EPA L03 n 96.944077 99.602745
20170411EPA_L01_cell03_c1.spc EPA L01 c 105.206245 108.094688
20170411EPA_L01_cell03_c2.spc EPA L01 c 106.551628 110.428452
20170411EPA_L01_cell03_c3.spc EPA L01 c 109.160118 106.048569
20170411STD_L01_cell06_n2.spc STD L01 n 106.644661 110.311798
20170411STD_L01_cell06_c1.spc STD L01 c 104.243263 107.908501
20170411STD_L01_cell06_c2.spc STD L01 c 106.463287 105.683914
20170413LDL_L03_cell07_n1.spc LDL L03 n 106.927330 109.932335
20170413LDL_L03_cell07_n3.spc LDL L03 n 108.781700 106.225166
20170413LDL_L03_cell07_c1.spc LDL L03 c 111.359879 104.354584
3798.643555
filename medium plate comp
20170410LDL_L01_cell01_n1.spc LDL L01 n 96.740280
20170410LDL_L01_cell01_n2.spc LDL L01 n 103.046486
20170410LDL_L01_cell01_c1.spc LDL L01 c 96.344177
20170413EPA_L03_cell07_n2.spc EPA L03 n 105.816727
20170413EPA_L03_cell07_n3.spc EPA L03 n 106.717010
20170413EPA_L03_cell07_c1.spc EPA L03 c 106.045967
20170413LDL_L03_cell05_c1.spc LDL L03 c 99.334679
20170413LDL_L03_cell05_c3.spc LDL L03 c 101.800484
20170412EDL_L02_cell04_n1.spc EDL L02 n 103.652229
20170412EDL_L02_cell04_c1.spc EDL L02 c 105.915222
20170412EDL_L02_cell04_c2.spc EDL L02 c 105.915222
20170413EDL_L03_cell07_n1.spc EDL L03 n 105.321831
20170413EDL_L03_cell07_n2.spc EDL L03 n 108.502388
20170413EDL_L03_cell07_c1.spc EDL L03 c 102.189667
20170413LDL_L03_cell06_n3.spc LDL L03 n 98.431641
20170413LDL_L03_cell06_c1.spc LDL L03 c 101.585381
20170413LDL_L03_cell06_c2.spc LDL L03 c 96.457222
20170412EDL_L02_cell05_n2.spc EDL L02 n 103.819313
20170413LDL_L03_cell06_c3.spc LDL L03 c 101.338341
20170411STD_L02_cell07_n1.spc STD L02 n 107.903648
20170411STD_L01_cell04_n2.spc STD L01 n 108.538307
20170411STD_L01_cell04_n3.spc STD L01 n 106.368233
20170411STD_L01_cell04_c3.spc STD L01 c 104.321785
20170411STD_L02_cell03_n2.spc STD L02 n 110.192810
20170413STD_L03_cell01_n1.spc STD L03 n 105.314232
20170413STD_L03_cell01_n2.spc STD L03 n 110.781212
20170411STD_L02_cell03_c3.spc STD L02 c 107.244873
20170413STD_L03_cell01_c3.spc STD L03 c 98.540520
20170413LDL_L03_cell01_c3.spc LDL L03 c 104.856796
20170411STD_L02_cell05_n1.spc STD L02 n 109.245895
... ...
20170413LDL_L03_cell02_n1.spc LDL L03 n 105.860580
20170411EPA_L01_cell07_n3.spc EPA L01 n 103.776634
20170413STD_L03_cell07_c1.spc STD L03 c 102.536720
20170413LDL_L03_cell02_c2.spc LDL L03 c 97.939407
20170413LDL_L03_cell02_c3.spc LDL L03 c 103.988991
20170410LDL_L01_cell06_c3.spc LDL L01 c 106.724968
20170410LDL_L01_cell02_n1.spc LDL L01 n 103.550636
20170410LDL_L01_cell02_c1.spc LDL L01 c 104.148216
20170413EPA_L03_cell01_n1.spc EPA L03 n 105.679573
20170413EPA_L03_cell01_n2.spc EPA L03 n 106.389786
20170413EPA_L03_cell01_c1.spc EPA L03 c 104.352638
20170413EPA_L03_cell01_c2.spc EPA L03 c 104.732430
20170413EPA_L03_cell01_c3.spc EPA L03 c 104.988060
20170410LDL_L01_cell03_n3.spc LDL L01 n 99.583786
20170410EDL_L01_cell04_n1.spc EDL L01 n 109.901634
20170410EDL_L01_cell04_n3.spc EDL L01 n 92.029289
20170410EDL_L01_cell04_c1.spc EDL L01 c 98.875000
20170410EDL_L01_cell04_c2.spc EDL L01 c 104.784950
20170413EPA_L03_cell02_n1.spc EPA L03 n 104.155212
20170413EPA_L03_cell06_n2.spc EPA L03 n 108.198776
20170413EPA_L03_cell06_n3.spc EPA L03 n 95.816971
20170411EPA_L01_cell03_c1.spc EPA L01 c 107.205368
20170411EPA_L01_cell03_c2.spc EPA L01 c 110.749710
20170411EPA_L01_cell03_c3.spc EPA L01 c 107.937019
20170411STD_L01_cell06_n2.spc STD L01 n 107.312279
20170411STD_L01_cell06_c1.spc STD L01 c 105.351532
20170411STD_L01_cell06_c2.spc STD L01 c 103.015663
20170413LDL_L03_cell07_n1.spc LDL L03 n 107.937340
20170413LDL_L03_cell07_n3.spc LDL L03 n 111.335320
20170413LDL_L03_cell07_c1.spc LDL L03 c 109.015938
[504 rows x 1732 columns]>
Calculate the mean spectrum by group according to cell culture medium¶
In [19]:
import matplotlib.pyplot as plt
%matplotlib inline
plt.plot(df.groupby('medium').mean().T)
plt.show()
Principle Component Analysis, illustration of loading plots, of screeplot and score plots¶
In [20]:
from sklearn.decomposition import PCA
In [21]:
pca = PCA()
pca.fit(spectrum)
Out[21]:
PCA(copy=True, iterated_power='auto', n_components=None, random_state=None, svd_solver='auto', tol=0.0, whiten=False)
In [22]:
wavelength=list_raman[0].wavelength
plt.plot(wavelength,pca.components_[:2].T)
plt.show()
In [23]:
plt.plot(pca.explained_variance_ratio_[0:5])
plt.show()
In [24]:
from sklearn.preprocessing import StandardScaler
from sklearn.pipeline import make_pipeline
In [25]:
pca_norm = make_pipeline(StandardScaler(), PCA(n_components=6, whiten=True))
pca = PCA(n_components=6, whiten=True)
X_r = pca.fit_transform(spectrum)
X_r = pca_norm.fit_transform(spectrum)
In [26]:
print(X_r.shape)
(504, 6)
In [27]:
plt.plot(wavelength,pca.components_[0].T)
plt.axvspan(1000, 1200, alpha=0.2, color='grey')
plt.show()
In [28]:
plt.plot(wavelength,pca.components_[1].T)
plt.axvspan(1000, 1200, alpha=0.2, color='grey')
plt.show()
In [29]:
plt.plot(wavelength,pca.components_[2].T)
plt.axvspan(1000, 1200, alpha=0.2, color='grey')
plt.show()
In [30]:
plt.plot(wavelength,pca.components_[3].T)
plt.axvspan(1000, 1200, alpha=0.2, color='grey')
plt.show()
In [31]:
plt.plot(wavelength,pca.components_[4].T)
plt.axvspan(1000, 1200, alpha=0.2, color='grey')
plt.axvspan(1350, 1400, alpha=0.2, color='grey')
plt.show()
In [32]:
plt.plot(wavelength,pca.components_[5].T)
plt.axvspan(1000, 1200, alpha=0.2, color='grey')
plt.show()
In [33]:
for medium in metadata['medium'].unique() :
mask = metadata['medium'] == medium
plt.scatter(X_r[mask, 0], X_r[mask, 1],
label=medium, s=5, alpha=0.7)
plt.legend()
plt.show()
In [34]:
plt.scatter(X_r[:, 0], X_r[:, 1])
plt.show()
In [35]:
from specio.core.util import Spectrum
Create a matrix with the spectra of a specific cell culture medium (one group) and plot the spectra, than calculate the second derivative and plot it¶
In [36]:
wavelength = dict_raman["EDL"][0].wavelength
spectrum = np.array([sp.amplitudes for sp in dict_raman["EDL"]])
inst_spect = Spectrum(amplitudes=spectrum, wavelength=wavelength, meta=None)
print(inst_spect)
Spectrum:
wavelength:
[ 400.20645142 402.73706055 405.26681519 ... 3795.69213867 3797.21679688
3798.74194336]
amplitudes:
[[210.1111145 216.55555725 222. ... 107.77482605 103.10241699
103.65222931]
[175.00001526 179.1111145 178.66667175 ... 102.47871399 105.25252533
105.91522217]
[175.00001526 179.1111145 178.66667175 ... 102.47871399 105.25252533
105.91522217]
...
[187.66667175 204.777771 209.8888855 ... 95.94671631 97.15467072
92.02928925]
[163.99998474 180.99998474 177.44444275 ... 100.88535309 102.9912796
98.875 ]
[189.1111145 197.55557251 198.8888855 ... 99.46099854 103.56742096
104.78495026]]
metadata:
{}
In [37]:
plt.plot(inst_spect.wavelength, inst_spect.amplitudes.T)
plt.show()
In [38]:
from scipy.misc import derivative
In [39]:
f=lambda x : np.exp(-x)*np.sin(x)
In [40]:
second=derivative(f,spectrum[0,:],n=2)
In [41]:
plt.plot(wavelength,second)
Out[41]:
[<matplotlib.lines.Line2D at 0x7f51d4a745c0>]
